Updates/fixes for CI, docs, tests, samples, and common library (#528)

- .github/workflows/continuous_integration.yml
  - apt-get update before apt-get install
  - remove libgtest-dev
  - actions-comment-pull-request: v2.4.3 -> v2.5.0
- .github/workflows/formatting.yml
  - create-pull-request: v5 -> v6
- cmake/rocprofiler_options.cmake
  - remove unused ROCPROFILER_DEBUG_TRACE and ROCPROFILER_LD_AQLPROFILE options
- samples/counter_collection/callback_client.cpp
  - corr_id field renamed to correlation_id
- samples/counter_collection/client.cpp
  - corr_id field renamed to correlation_id
- include/rocprofiler-sdk/fwd.h
  - In rocprofiler_record_counter_t: rename corr_id field to correlation_id
  - doxygen fixes
- lib/common/utility.*
  - remove get_accurate_clock_id_impl
  - timestamp_ns() defaults to CLOCK_BOOTTIME
- lib/rocprofiler-sdk/counters/core.cpp
  - fix spelling mistake: extrenal -> external
  - corr_id field renamed to correlation_id
- lib/rocprofiler-sdk-tool/tool.cpp
  - fix destruction of static tool::output_file before finalization
- scripts/update-docs.sh
  - define PROJECT_NAME
- tests/async-copy-tracing/validate.py
  - init_time and fini_time checks
  - hip_api_traces, marker_api_tracing
- tests/common/serialization.hpp
  - fix save function for rocprofiler_record_counter_t following rename of corr_id to correlation_id
- tests/kernel-tracing/validate.py
  - init_time and fini_time checks
  - relax test_total_runtime range
- tests/rocprofv3/tracing/CMakeLists.txt
  - remove -M from rocprofv3-test-systrace-execute
  - exclude test_hsa_api_trace in rocprofv3-test-systrace-validate due to HIP API tracing
- tests/rocprofv3/tracing/validate.py
  - update test_kernel_trace to accept mangled or demangled
- tests/tools/json-tool.cpp
  - remove use of GLOG
  - include init_time and fini_time
  - write_json(...) function

.github/workflows/continuous_integration.yml

@@ -89,7 +89,7 @@ jobs:
       run: |
         git config --global --add safe.directory '*'
         apt-get update
-        apt-get install -y cmake clang-tidy-11 g++-11 g++-12 libgtest-dev python3-pip
+        apt-get install -y cmake clang-tidy-11 g++-11 g++-12 python3-pip
         update-alternatives --install /usr/bin/clang-tidy clang-tidy /usr/bin/clang-tidy-11 10
         update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-11 10 --slave /usr/bin/g++ g++ /usr/bin/g++-11
         update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-12 20 --slave /usr/bin/g++ g++ /usr/bin/g++-12
@@ -257,7 +257,8 @@ jobs:
       shell: bash
       run: |
         git config --global --add safe.directory '*'
-        apt-get install -y cmake libgtest-dev python3-pip gcovr wkhtmltopdf xvfb xfonts-base xfonts-75dpi xfonts-100dpi xfonts-utils xfonts-encodings libfontconfig
+        apt-get update
+        apt-get install -y cmake python3-pip gcovr wkhtmltopdf xvfb xfonts-base xfonts-75dpi xfonts-100dpi xfonts-utils xfonts-encodings libfontconfig
         python3 -m pip install -r requirements.txt
         python3 -m pip install pytest pycobertura
 
@@ -356,7 +357,7 @@ jobs:
     - name: Write Code Coverage Comment
       if: github.event_name == 'pull_request'
       timeout-minutes: 5
-      uses: thollander/actions-comment-pull-request@v2.4.3
+      uses: thollander/actions-comment-pull-request@v2.5.0
       with:
         comment_tag: codecov-report
         filePath: .codecov/report.md
@@ -471,7 +472,8 @@ jobs:
       shell: bash
       run: |
         git config --global --add safe.directory '*'
-        apt-get install -y cmake libgtest-dev python3-pip libasan8 libtsan2 software-properties-common
+        apt-get update
+        apt-get install -y cmake python3-pip libasan8 libtsan2 software-properties-common
         python3 -m pip install -r requirements.txt
         python3 -m pip install pytest
         add-apt-repository ppa:ubuntu-toolchain-r/test

.github/workflows/formatting.yml

@@ -48,7 +48,7 @@ jobs:
 
     - name: Create pull request
       if: failure()
-      uses: peter-evans/create-pull-request@v5
+      uses: peter-evans/create-pull-request@v6
       with:
         commit-message: "cmake formatting (cmake-format)"
         branch: ${{ steps.extract_branch.outputs.branch }}-cmake-format
@@ -90,7 +90,7 @@ jobs:
 
     - name: Create pull request
       if: failure()
-      uses: peter-evans/create-pull-request@v5
+      uses: peter-evans/create-pull-request@v6
       with:
         commit-message: "source formatting (clang-format v11)"
         branch: ${{ steps.extract_branch.outputs.branch }}-clang-format
@@ -137,7 +137,7 @@ jobs:
 
     - name: Create pull request
       if: failure()
-      uses: peter-evans/create-pull-request@v5
+      uses: peter-evans/create-pull-request@v6
       with:
         commit-message: "python formatting (black)"
         branch: ${{ steps.extract_branch.outputs.branch }}-python-format