Updates/fixes for CI, docs, tests, samples, and common library (#528)

- .github/workflows/continuous_integration.yml
  - apt-get update before apt-get install
  - remove libgtest-dev
  - actions-comment-pull-request: v2.4.3 -> v2.5.0
- .github/workflows/formatting.yml
  - create-pull-request: v5 -> v6
- cmake/rocprofiler_options.cmake
  - remove unused ROCPROFILER_DEBUG_TRACE and ROCPROFILER_LD_AQLPROFILE options
- samples/counter_collection/callback_client.cpp
  - corr_id field renamed to correlation_id
- samples/counter_collection/client.cpp
  - corr_id field renamed to correlation_id
- include/rocprofiler-sdk/fwd.h
  - In rocprofiler_record_counter_t: rename corr_id field to correlation_id
  - doxygen fixes
- lib/common/utility.*
  - remove get_accurate_clock_id_impl
  - timestamp_ns() defaults to CLOCK_BOOTTIME
- lib/rocprofiler-sdk/counters/core.cpp
  - fix spelling mistake: extrenal -> external
  - corr_id field renamed to correlation_id
- lib/rocprofiler-sdk-tool/tool.cpp
  - fix destruction of static tool::output_file before finalization
- scripts/update-docs.sh
  - define PROJECT_NAME
- tests/async-copy-tracing/validate.py
  - init_time and fini_time checks
  - hip_api_traces, marker_api_tracing
- tests/common/serialization.hpp
  - fix save function for rocprofiler_record_counter_t following rename of corr_id to correlation_id
- tests/kernel-tracing/validate.py
  - init_time and fini_time checks
  - relax test_total_runtime range
- tests/rocprofv3/tracing/CMakeLists.txt
  - remove -M from rocprofv3-test-systrace-execute
  - exclude test_hsa_api_trace in rocprofv3-test-systrace-validate due to HIP API tracing
- tests/rocprofv3/tracing/validate.py
  - update test_kernel_trace to accept mangled or demangled
- tests/tools/json-tool.cpp
  - remove use of GLOG
  - include init_time and fini_time
  - write_json(...) function

tests/rocprofv3/tracing/CMakeLists.txt

@@ -84,7 +84,7 @@ set_tests_properties(
 add_test(
     NAME rocprofv3-test-systrace-execute
     COMMAND
-        $<TARGET_FILE:rocprofiler-sdk::rocprofv3> -M --sys-trace -d
+        $<TARGET_FILE:rocprofiler-sdk::rocprofv3> --sys-trace -d
         ${CMAKE_CURRENT_BINARY_DIR}/%argt%-systrace -o out
         $<TARGET_FILE:simple-transpose>)
 
@@ -102,7 +102,8 @@ set_tests_properties(
 add_test(
     NAME rocprofv3-test-systrace-validate
     COMMAND
-        ${Python3_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/validate.py --hsa-input
+        ${Python3_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/validate.py -k
+        "not test_hsa_api_trace" --hsa-input
         ${CMAKE_CURRENT_BINARY_DIR}/simple-transpose-systrace/out_hsa_api_trace.csv
         --kernel-input
         ${CMAKE_CURRENT_BINARY_DIR}/simple-transpose-systrace/out_kernel_trace.csv

tests/rocprofv3/tracing/validate.py

@@ -2,7 +2,6 @@
 
 import sys
 import pytest
-import re
 
 
 def test_hsa_api_trace(hsa_input_data):
@@ -37,13 +36,18 @@ def test_hsa_api_trace(hsa_input_data):
 
 
 def test_kernel_trace(kernel_input_data):
-    mangled_kernel_name = "_Z15matrixTransposePfS_i.kd"
+    valid_kernel_names = (
+        "_Z15matrixTransposePfS_i.kd",
+        "matrixTranspose(float*, float*, int)",
+    )
+
+    assert len(kernel_input_data) == 1
     for row in kernel_input_data:
         assert row["Kind"] == "KERNEL_DISPATCH"
         assert int(row["Agent_Id"]) > 0
         assert int(row["Queue_Id"]) > 0
         assert int(row["Kernel_Id"]) > 0
-        assert row["Kernel_Name"] == mangled_kernel_name
+        assert row["Kernel_Name"] in valid_kernel_names
         assert int(row["Correlation_Id"]) > 0
         assert int(row["Workgroup_Size_X"]) == 4
         assert int(row["Workgroup_Size_Y"]) == 4