Documentation + Miscellaneous Fixes (#36)

* Added documentation markdown source

* Replaced AARInternal with AMDResearch in URLs

* Renamed cpack artifact names

* Fix to testing and lulesh submodule checkout

* Docker updates

* CMake and CPack

- force CMAKE_INSTALL_LIBDIR to lib
- CPACK_DEBIAN_PACKAGE_RELEASE uses OMNITRACE_CPACK_SYSTEM_NAME
- CPACK_RPM_PACKAGE_RELEASE uses OMNITRACE_CPACK_SYSTEM_NAME
- Tweak LIBOMP_LIBRARY find in examples/openmp
- Tweak setup-env.sh.in

* Partial update of README

- status badges
- docs link
- removed install info (covered by docs)

* OMNITRACE_SAMPLING_CPUS setting

- enables control over which CPUs are sampled for frequency

* omnitrace exe updates

- exclude transaction clone, virtual thunk, non-virtual thunk
- module_function::start_address
- module_function::instructions
- verbosity > 0 encodes instructions into JSON

* Miscellaneous fixes

- relocate setup-env.sh.in
- add modulefile.in
- Updated README.md and source/docs/about.md
- cmake fix for libomp
- fix license in miscellaneous places
- dl.hpp and dl.cpp

* Update timemory and dyninst submodules

- timemory signals updates
- dyninst Movement-adhoc updates

* cmake format

[ROCm/rocprofiler-systems commit: 945f541965]

projects/rocprofiler-systems/examples/openmp/CG/cg.cpp

@@ -57,7 +57,6 @@ Authors of the OpenMP code:
 
 #include "../common/npb-CPP.hpp"
 #include "npbparams.hpp"
-#include "omp.h"
 
 /*
  * ---------------------------------------------------------------------

projects/rocprofiler-systems/examples/openmp/CMakeLists.txt

@@ -12,12 +12,14 @@ add_executable(openmp-lu ${CMAKE_CURRENT_SOURCE_DIR}/LU/lu.cpp
                          $<TARGET_OBJECTS:openmp-common>)
 
 find_program(CLANGXX_EXECUTABLE NAMES clang++)
-if(CLANGXX_EXECUTABLE)
+find_library(LIBOMP_LIBRARY
+             NAMES omp ${CMAKE_SHARED_LIBRARY_PREFIX}omp${CMAKE_SHARED_LIBRARY_SUFFIX}.5)
+if(CLANGXX_EXECUTABLE AND LIBOMP_LIBRARY)
     target_compile_options(openmp-common PUBLIC -W -Wall -fopenmp=libomp)
     target_compile_options(openmp-cg PRIVATE -W -Wall -fopenmp=libomp)
-    target_link_libraries(openmp-cg PRIVATE omp)
+    target_link_libraries(openmp-cg PRIVATE ${LIBOMP_LIBRARY})
     target_compile_options(openmp-lu PRIVATE -W -Wall -fopenmp=libomp)
-    target_link_libraries(openmp-lu PRIVATE omp)
+    target_link_libraries(openmp-lu PRIVATE ${LIBOMP_LIBRARY})
     omnitrace_custom_compilation(COMPILER ${CLANGXX_EXECUTABLE} TARGET openmp-common)
     omnitrace_custom_compilation(COMPILER ${CLANGXX_EXECUTABLE} TARGET openmp-cg)
     omnitrace_custom_compilation(COMPILER ${CLANGXX_EXECUTABLE} TARGET openmp-lu)

projects/rocprofiler-systems/examples/openmp/LU/lu.cpp

@@ -59,7 +59,6 @@ Authors of the OpenMP code:
 
 #include "../common/npb-CPP.hpp"
 #include "npbparams.hpp"
-#include "omp.h"
 
 /*
  * ---------------------------------------------------------------------
@@ -2095,8 +2094,8 @@ read_input()
      * ---------------------------------------------------------------------
      */
     FILE* fp;
-    int   avoid_warning;
-    if((fp = fopen("inputlu.data", "r")) != NULL)
+    int   avoid_warning = 0;
+    if((fp = fopen("inputlu.data", "r")) != nullptr)
     {
         printf("Reading from input file inputlu.data\n");
         while(fgetc(fp) != '\n')
@@ -2156,6 +2155,7 @@ read_input()
         ny0       = ISIZ2;
         nz0       = ISIZ3;
     }
+    (void) avoid_warning;
     /*
      * ---------------------------------------------------------------------
      * check problem size