[rocprofv3] Add rocpd output support (part 1: prelude) (#401)

* [rocprofv3] Add rocpd output support (part 1: prelude)

- git submodules for sqlite3, GOTCHA, and pybind11
- HIP stream data
- rocprofiler_query_intercept_table_name(...)
- serialization load
- rocprofiler::sdk::get_perfetto_category(KindT)
- rocprofiler::sdk::parse::strip
- common library updates
  - md5sum
  - hasher
  - simple_timer
  - static_tl_object
  - get_process_start_time_ns(pid_t)
- output library updates
  - node_info
  - file_generator (generator is now virtual base class)
  - stream info updates

* Added submodules

* Code review updates

* Minor unused-but-set-X warning fixes

* Update CI

- install libsqlite3-dev package

* Update CI

- install libsqlite3-dev package

* Fix static thread-local object memory leak

- also fix signal handler chaining

* Remove URL from comment

* Remove page migration exception

* Enable ROCPROFILER_BUILD_SQLITE3 by default

- try find_package(SQLite3) first and then build when ROCPROFILER_BUILD_SQLITE3=ON

* Fix gotcha installation

- make install of target optional

* Validate tracing + counter collection dispatch data

- i.e. correlation ids, thread ids, timestamps

* Make find_package(SQLite3) optional

- ROCm CI does not have SQLite3 dev package installed and cannot build from source (missing tclsh)

* Fixes to tracing + counter collection test

* get_process_start_time_ns update

- original implementation did not work

* Fix pytest-packages test_perfetto_data for counter collection

- erroneous failure when used with same PMC + multiple agents

* cmake policy: option() honors normal variables

- for GOTCHA submodule

* Improve samples/api_buffered_tracing stability

- reduce likelihood of sporadic exception throw

* Update gotcha submodule

---------

Co-authored-by: Jonathan R. Madsen <jonathanrmadsen@gmail.com>

source/lib/output/generateJSON.cpp

@@ -100,16 +100,14 @@ write_json(json_output&         json_ar,
 {
     // metadata
     {
-        auto timestamps =
-            timestamps_t{tool_metadata.process_start_ns, tool_metadata.process_end_ns};
-
         json_ar.setNextName("metadata");
         json_ar.startNode();
+        json_ar(cereal::make_nvp("node", tool_metadata.node_data));
         json_ar(cereal::make_nvp("pid", pid));
-        json_ar(cereal::make_nvp("init_time", timestamps.app_start_time));
-        json_ar(cereal::make_nvp("fini_time", timestamps.app_end_time));
+        json_ar(cereal::make_nvp("init_time", tool_metadata.process_start_ns));
+        json_ar(cereal::make_nvp("fini_time", tool_metadata.process_end_ns));
+        json_ar(cereal::make_nvp("command", tool_metadata.command_line));
         json_ar(cereal::make_nvp("config", cfg));
-        json_ar(cereal::make_nvp("command", common::read_command_line(pid)));
         json_ar.finishNode();
     }
 
@@ -183,23 +181,24 @@ write_json(json_output&         json_ar,
 }
 
 void
-write_json(json_output& json_ar,
-           const output_config& /*cfg*/,
-           const metadata& /*tool_metadata*/,
-           const domain_stats_vec_t&                                        domain_stats,
-           generator<rocprofiler_buffer_tracing_hip_api_ext_record_t>&&     hip_api_gen,
-           generator<rocprofiler_buffer_tracing_hsa_api_record_t>           hsa_api_gen,
-           generator<tool_buffer_tracing_kernel_dispatch_ext_record_t>      kernel_dispatch_gen,
-           generator<tool_buffer_tracing_memory_copy_ext_record_t>          memory_copy_gen,
-           generator<tool_counter_record_t>                                 counter_collection_gen,
-           generator<rocprofiler_buffer_tracing_marker_api_record_t>        marker_api_gen,
-           generator<rocprofiler_buffer_tracing_scratch_memory_record_t>    scratch_memory_gen,
-           generator<rocprofiler_buffer_tracing_rccl_api_record_t>          rccl_api_gen,
-           generator<rocprofiler_buffer_tracing_memory_allocation_record_t> memory_allocation_gen,
-           generator<rocprofiler_buffer_tracing_rocdecode_api_ext_record_t> rocdecode_api_gen,
-           generator<rocprofiler_buffer_tracing_rocjpeg_api_record_t>       rocjpeg_api_gen,
-           generator<rocprofiler_tool_pc_sampling_host_trap_record_t>  pc_sampling_host_trap_gen,
-           generator<rocprofiler_tool_pc_sampling_stochastic_record_t> pc_sampling_stochastic_gen)
+write_json(
+    json_output& json_ar,
+    const output_config& /*cfg*/,
+    const metadata& /*tool_metadata*/,
+    const domain_stats_vec_t&                                               domain_stats,
+    const generator<rocprofiler_buffer_tracing_hip_api_ext_record_t>&       hip_api_gen,
+    const generator<rocprofiler_buffer_tracing_hsa_api_record_t>&           hsa_api_gen,
+    const generator<tool_buffer_tracing_kernel_dispatch_ext_record_t>&      kernel_dispatch_gen,
+    const generator<tool_buffer_tracing_memory_copy_ext_record_t>&          memory_copy_gen,
+    const generator<tool_counter_record_t>&                                 counter_collection_gen,
+    const generator<rocprofiler_buffer_tracing_marker_api_record_t>&        marker_api_gen,
+    const generator<rocprofiler_buffer_tracing_scratch_memory_record_t>&    scratch_memory_gen,
+    const generator<rocprofiler_buffer_tracing_rccl_api_record_t>&          rccl_api_gen,
+    const generator<tool_buffer_tracing_memory_allocation_ext_record_t>&    memory_allocation_gen,
+    const generator<rocprofiler_buffer_tracing_rocdecode_api_ext_record_t>& rocdecode_api_gen,
+    const generator<rocprofiler_buffer_tracing_rocjpeg_api_record_t>&       rocjpeg_api_gen,
+    const generator<rocprofiler_tool_pc_sampling_host_trap_record_t>&  pc_sampling_host_trap_gen,
+    const generator<rocprofiler_tool_pc_sampling_stochastic_record_t>& pc_sampling_stochastic_gen)
 {
     // summary
     {