Fix the main library stop routine for timemory (#39)

* Fix the main library stop routine for timemory

- the main pop_timemory function was popping too many calls
- this primarily affected recursive calls

* Lengthen the timeout for the Configure CMake step

* Fix python tests

- new validate-timemory-json.py script

* Documentation update

- Call-counts in timemory output examples in documentation were affected by the changes

* Fix the per-thread metrics during finalization

- pthread_create_mutex starts/stops the per-thread data
- removed unintentional continue statement

* Docs tweaks

* Fix lap counter on per-thread metrics

.github/workflows/ubuntu-bionic.yml

@@ -66,7 +66,7 @@ jobs:
         echo "LD_LIBRARY_PATH=/opt/omnitrace/lib:${LD_LIBRARY_PATH}" >> $GITHUB_ENV
 
     - name: Configure CMake
-      timeout-minutes: 5
+      timeout-minutes: 10
       run:
         cmake --version &&
         if [ -z "${{ matrix.mpi }}" ]; then USE_MPI=OFF; else USE_MPI=ON; fi &&

.github/workflows/ubuntu-focal-external-rocm.yml

@@ -48,7 +48,7 @@ jobs:
         echo "LD_LIBRARY_PATH=/opt/omnitrace/lib:/opt/dyninst/lib:/opt/elfutils/lib:${LD_LIBRARY_PATH}" >> $GITHUB_ENV
 
     - name: Configure CMake
-      timeout-minutes: 5
+      timeout-minutes: 10
       run:
         git config --global --add safe.directory ${PWD} &&
         cmake --version &&

.github/workflows/ubuntu-focal-external.yml

@@ -76,7 +76,7 @@ jobs:
         echo "LD_LIBRARY_PATH=/opt/omnitrace/lib:${LD_LIBRARY_PATH}" >> $GITHUB_ENV
 
     - name: Configure CMake
-      timeout-minutes: 5
+      timeout-minutes: 10
       run:
         git config --global --add safe.directory ${PWD} &&
         cmake --version &&

.github/workflows/ubuntu-focal.yml

@@ -40,7 +40,7 @@ jobs:
         echo "LD_LIBRARY_PATH=/opt/omnitrace/lib:${LD_LIBRARY_PATH}" >> $GITHUB_ENV
 
     - name: Configure CMake
-      timeout-minutes: 5
+      timeout-minutes: 10
       run:
         cmake --version &&
         if [ -z "${{ matrix.mpi }}" ]; then USE_MPI=OFF; else USE_MPI=ON; fi &&