Support for tracing mutex locking (#52)

* Parallel overhead example with locks

* Support tracing mutex locking + more

- support wrapping pthread_mutex_lock
- support wrapping pthread_mutex_unlock
- support wrapping pthread_mutex_trylock
- get_perfetto_combined_traces setting
- OMNITRACE_TRACE_THREAD_LOCKS option
- ThreadState
- critical trace includes queue id
- enabled/disabled settings in timemory
- fix OMNITRACE_TIMEMORY_COMPONENTS
- fix reading config
- fix setting categories
- applied ThreadState::Internal in various places
- utility::get_filled_array
- utility::get_reserved_vector
- utility::get_thread_index
- fork_gotcha messages about forks
- split out some pthread_gotcha functionality into pthread_create_gotcha
- handle queue id in roctracer callbacks

* Update timemory and PTL submodules

* Misc CMake updates

- Includes fix to omnitrace-static-lib{gcc,stdcxx}

* Misc cleanup to pthread_mutex_gotcha and backtrace

* Fix to duplicate field in module_function json

* Improvement to debug messages

* omnitrace-dl and common improvements

- tweak to delimit
- common::ignore message
- common::join quoting of strings
- omnitrace_set_env ignores if inited and active
- omnitrace_set_mpi ignores if inited and active

* nsync for transpose example

* Fix to thread_deleter<void> functor invoke

* Fix thread state and HIP stream enums

source/bin/omnitrace-avail/CMakeLists.txt

@@ -9,7 +9,7 @@ add_executable(
     ${CMAKE_CURRENT_LIST_DIR}/avail.cpp ${CMAKE_CURRENT_LIST_DIR}/avail.hpp
     $<TARGET_OBJECTS:omnitrace::omnitrace-object-library>)
 
-target_include_directories(omnitrace-avail PRIVATE ${CMAKE_CURRENT_LIST_DIR}/include)
+target_include_directories(omnitrace-avail PRIVATE ${CMAKE_CURRENT_LIST_DIR})
 target_compile_definitions(omnitrace-avail PRIVATE OMNITRACE_EXTERN_COMPONENTS=0)
 target_link_libraries(omnitrace-avail PRIVATE omnitrace::omnitrace-compile-definitions
                                               omnitrace::omnitrace-interface-library)

source/bin/omnitrace-avail/avail.cpp

@@ -439,7 +439,9 @@ main(int argc, char** argv)
 
     parser.add_argument({ "" }, "");
     parser.add_argument({ "[VIEW OPTIONS]" }, "");
-    parser.add_argument({ "-A", "--available" }, "Only display available components")
+    parser
+        .add_argument({ "-A", "--available" },
+                      "Only display available components/settings/hw-counters")
         .max_count(1)
         .action([](parser_t& p) { available_only = p.get<bool>("available"); });
     parser
@@ -892,8 +894,8 @@ write_settings_info(std::ostream& os, const array_t<bool, N>& opts,
         _setting_output.end());
 
     // patch up the categories
-    str_set_t _not_in_category_view{};
-    auto      _settings = tim::settings::shared_instance();
+    auto _not_in_category_view = str_set_t{};
+    auto _settings             = tim::settings::shared_instance();
     for(auto& itr : _setting_output)
     {
         auto _name = itr.find("environ")->second;
@@ -942,6 +944,19 @@ write_settings_info(std::ostream& os, const array_t<bool, N>& opts,
                                          }),
                           _setting_output.end());
 
+    if(available_only)
+    {
+        _setting_output.erase(
+            std::remove_if(_setting_output.begin(), _setting_output.end(),
+                           [&_settings](const auto& itr) {
+                               auto iitr = _settings->find(itr.at("environ"));
+                               if(iitr != _settings->end())
+                                   return (iitr->second->get_enabled() == false);
+                               return true;
+                           }),
+            _setting_output.end());
+    }
+
     if(alphabetical)
     {
         std::sort(_setting_output.begin(), _setting_output.end(),

source/bin/omnitrace-critical-trace/CMakeLists.txt

@@ -10,12 +10,13 @@ add_executable(
     ${CMAKE_CURRENT_LIST_DIR}/critical-trace.hpp
     $<TARGET_OBJECTS:omnitrace::omnitrace-object-library>)
 
-target_include_directories(omnitrace-critical-trace
-                           PRIVATE ${CMAKE_CURRENT_LIST_DIR}/include)
+target_include_directories(omnitrace-critical-trace PRIVATE ${CMAKE_CURRENT_LIST_DIR})
 target_compile_definitions(omnitrace-critical-trace PRIVATE OMNITRACE_EXTERN_COMPONENTS=0)
 target_link_libraries(
-    omnitrace-critical-trace PRIVATE omnitrace::omnitrace-compile-definitions
-                                     omnitrace::omnitrace-interface-library)
+    omnitrace-critical-trace
+    PRIVATE omnitrace::omnitrace-compile-definitions
+            omnitrace::omnitrace-interface-library omnitrace::omnitrace-headers
+            omnitrace::omnitrace-timemory)
 set_target_properties(
     omnitrace-critical-trace
     PROPERTIES BUILD_RPATH "\$ORIGIN:${PROJECT_BINARY_DIR}:${CMAKE_BINARY_DIR}"

source/bin/omnitrace/module_function.hpp

@@ -176,7 +176,7 @@ module_function::serialize(ArchiveT& ar, const unsigned)
     }
 
     ar(cereal::make_nvp("address_range", address_range),
-       cereal::make_nvp("instructions", num_instructions),
+       cereal::make_nvp("num_instructions", num_instructions),
        cereal::make_nvp("module", module_name),
        cereal::make_nvp("function", function_name),
        cereal::make_nvp("signature", signature));