restructure libomnitrace + tasking and omnitrace-causal updates (#237)

* restructured libomnitrace

- this is necessary to incorporate some of the binary analysis capabilities into omnitrace exe
- created libomnitrace-core (static)
- created libomnitrace-binary (static)
- created libomnitrace (static)
- omnitrace-avail links to libomnitrace.a
- omnitrace-critical-trace links to libomnitrace.a
- tweaked the testing
  - reduced verbosity on some of MPI tests
  - excluded trace-time-window from tests on Ubuntu 18.04
  - reduced causal e2e iterations
- minor tweak to tasking
  - manually create `PTL::UserTaskQueue` instance instead of relying on `PTL::ThreadPool` to create it

* Update formatting workflow

- source formatting uses ubuntu-22.04
- check-includes doesn't generate false positive for 'include "timemory.hpp"'

* omnitrace-causal --generate-configs

- fix config generation in omnitrace causal
- add test for omnitrace-causal + generating configs

* Fix omnitrace-object-library build

- accidentally included rocm sources in non-rocm builds

* Fix rocm compilation w/o rocprofiler

* update timemory submodule with mpi_get warning messages

* sampling offload file updates

- more verbose messages
- disable offload before stopping

* testing updates

- increase causal e2e iterations to 12
- increase lock_environment verbose to 2 (for sampling offload messages)
- fix return for omnitrace_add_validation_test

.github/workflows/formatting.yml

@@ -64,7 +64,7 @@ jobs:
         fi
 
   source:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-22.04
 
     steps:
     - uses: actions/checkout@v3
@@ -72,12 +72,7 @@ jobs:
       run: |
         DISTRIB_CODENAME=$(cat /etc/lsb-release | grep DISTRIB_CODENAME | awk -F '=' '{print $NF}')
         sudo apt-get update
-        sudo apt-get install -y software-properties-common wget curl
-        wget -O - https://apt.llvm.org/llvm-snapshot.gpg.key | sudo apt-key add -
-        echo "deb http://apt.llvm.org/${DISTRIB_CODENAME}/ llvm-toolchain-${DISTRIB_CODENAME}-11 main" | sudo tee -a /etc/apt/sources.list.d/llvm-toolchain.list
-        echo "deb-src http://apt.llvm.org/${DISTRIB_CODENAME}/ llvm-toolchain-${DISTRIB_CODENAME}-11 main" | sudo tee -a /etc/apt/sources.list.d/llvm-toolchain.list
-        sudo apt-get update
-        sudo apt-get install -y clang-format-11
+        sudo apt-get install -y software-properties-common wget curl clang-format-11
     - name: clang-format
       run: |
         set +e
@@ -99,8 +94,8 @@ jobs:
     - name: check-includes
       run: |
         set +e
-        FILES=$(find source examples -type f | egrep '\.hpp$|\.cpp$|\.cpp\.in$')
-        MATCHES=$(egrep 'include "timemory|include <bits' ${FILES})
+        FILES=$(find source examples -type f | egrep '\.(hpp|cpp)(|\.in)$')
+        MATCHES=$(egrep 'include "timemory/|include <bits/' ${FILES})
         if [ -n "${MATCHES}" ]; then
           echo -e "\nError! Included timemory header with quotes or bits folder included\n"
           echo -e "### MATCHES: ###"