Support for Ubuntu 22.04 and ROCm 5.3 (#48)

* Testing and CI support for Ubuntu 22.04

* Fixes for ROCm

- Jammy does not have ROCm installers

* Name, timeout, and python updates

- renamed ubuntu-jammy-external.yml to ubuntu-jammy.yml
- increased all 5 minute timeouts to 10 minutes
- include python 3.10 in testing

* Update dyninst to remove interposed definition of _r_debug

* Rebuild Dyninst + test install script

* Revert container change

* git safe directory

* pushd -> cd

* fix MPI include

* Fix testing step

* OMPI_ALLOW_RUN_AS_ROOT

* Test script changes

* Fix mismatched malloc / delete[]

* Jammy workflow tweaks

* CPack tweak for boost deb deps

* pthread_mutex_gotcha config returns when not enabled

* fix echoing config in CI

* USE_CLANG_OMP

- option to disable using LLVM OpenMP when building OpenMP test executables
- Jammy workflow sets USE_CLANG_OMP=OFF

* Dyninst submodule boost download

- updated containers workflow to include jammy
- updated workflow to use ci

* Updates to workflows + replace test-install.sh

- test-install.sh in this branch was replaced with one in main branch

* Expand jammy test-install.sh args

* Fix openmp-cg-sampling-duration test

* update timemory submodule

- use-after-free violation in popen::pclose

* revert some tweaks to sampling-duration test

* Fix env of test-install.sh

* cmake format

* jammy bash

* CPack install for jammy

* formatting workflow action version bump

* Update timemory submodule

- libunwind submodule via timemory sets SOVERSION to 99 to avoid ABI conflicts with v8

* Fix help menu for omnitrace-sample

* Support other boolean forms in test-install.sh

* Update docker files and build-docker.sh

- consolidated cases in build-docker.sh
- support rocm version of 0.0 (no rocm install)
- support rocm v5.3
- updated centos handling

* update opensuse actions/checkout version

* Tweaks to ubuntu-focal testing

- actions/checkout@v3
- use test-install script

* update cpack

- ubuntu 22.04
- rocm 5.3
- rename os matrix field to os-version
- remove CI_ROCM_VERSION (no longer necessary)
- remove default-rocm-version matrix field (no longer necessary)
- CentOS packaging

* fix argparsing and omnitrace-sample tests in install-tests.sh

* focal rocm test install workflow fix

* Fix omnitrace-sample build

* Dockerfile.centos + build-docker.sh updates

* Update actions/upload-artifact version

* Dockerfile.ubuntu: install rocm-device-libs

* Refactor cpack

* fix cpack if quotes

* Dockerfile.ubuntu rocm < 5 installs rocm-dev

* build-release.sh defaults to boost version 1.79.0

examples/mpi/mpi.cpp

@@ -22,6 +22,7 @@
 
 #include <mpi.h>
 
+#include <array>
 #include <cfloat>
 #include <chrono>
 #include <cmath>

examples/openmp/CMakeLists.txt

@@ -11,6 +11,7 @@ add_executable(openmp-cg ${CMAKE_CURRENT_SOURCE_DIR}/CG/cg.cpp
 add_executable(openmp-lu ${CMAKE_CURRENT_SOURCE_DIR}/LU/lu.cpp
                          $<TARGET_OBJECTS:openmp-common>)
 
+option(USE_CLANG_OMP "Use the clang OpenMP if available" ON)
 if(CMAKE_CXX_COMPILER_ID MATCHES "Clang")
     find_package(OpenMP REQUIRED)
     target_link_libraries(openmp-common PUBLIC OpenMP::OpenMP_CXX)
@@ -24,7 +25,8 @@ else()
         NAMES omp omp5 ${CMAKE_SHARED_LIBRARY_PREFIX}omp${CMAKE_SHARED_LIBRARY_SUFFIX}.5)
     if(CLANGXX_EXECUTABLE
        AND LIBOMP_LIBRARY
-       AND COMMAND omnitrace_custom_compilation)
+       AND COMMAND omnitrace_custom_compilation
+       AND USE_CLANG_OMP)
         target_compile_options(openmp-common PUBLIC -W -Wall -fopenmp=libomp)
         target_link_libraries(openmp-common PUBLIC ${LIBOMP_LIBRARY})
         omnitrace_custom_compilation(COMPILER ${CLANGXX_EXECUTABLE} TARGET openmp-common)