* Fix the main library stop routine for timemory
- the main pop_timemory function was popping too many calls
- this primarily affected recursive calls
* Lengthen the timeout for the Configure CMake step
* Fix python tests
- new validate-timemory-json.py script
* Documentation update
- Call-counts in timemory output examples in documentation were affected by the changes
* Fix the per-thread metrics during finalization
- pthread_create_mutex starts/stops the per-thread data
- removed unintentional continue statement
* Docs tweaks
* Fix lap counter on per-thread metrics
* Fix sampling counter time scales
- All perfetto trace events have "begin_ns" and "end_ns" debug fields
- data for thread start and end timestamp in pthread_create_gotcha
- discard samples outside of thread start and end timestamps
- rename "CPU User CPU Time" perfetto counter to "CPU User Time"
- rename "CPU Kernel CPU Time" perfetto counter to "CPU Kernel Time"
- ensure CPU system samples in perfetto are set to zero at end
- backtrace uses comp::wall_clock record() for timestamps (consistency)
- "Peak Memory Usage [Thread X] (S)" renamed to "Thread Peak Memory Usage [X] (S)"
- "Context Switches [Thread X] (S)" renamed to "Thread Context Switches Usage [X] (S)"
- "Page Faults [Thread X] (S)" renamed to "Thread Page Faults Usage [X] (S)"
- "<PAPI_DESC> [Thread X] (S)" renamed to "Thread <PAPI_DESC> [X] (S)"
- samples
* Fix includes
* Parallel overhead example with locks
* Support tracing mutex locking + more
- support wrapping pthread_mutex_lock
- support wrapping pthread_mutex_unlock
- support wrapping pthread_mutex_trylock
- get_perfetto_combined_traces setting
- OMNITRACE_TRACE_THREAD_LOCKS option
- ThreadState
- critical trace includes queue id
- enabled/disabled settings in timemory
- fix OMNITRACE_TIMEMORY_COMPONENTS
- fix reading config
- fix setting categories
- applied ThreadState::Internal in various places
- utility::get_filled_array
- utility::get_reserved_vector
- utility::get_thread_index
- fork_gotcha messages about forks
- split out some pthread_gotcha functionality into pthread_create_gotcha
- handle queue id in roctracer callbacks
* Update timemory and PTL submodules
* Misc CMake updates
- Includes fix to omnitrace-static-lib{gcc,stdcxx}
* Misc cleanup to pthread_mutex_gotcha and backtrace
* Fix to duplicate field in module_function json
* Improvement to debug messages
* omnitrace-dl and common improvements
- tweak to delimit
- common::ignore message
- common::join quoting of strings
- omnitrace_set_env ignores if inited and active
- omnitrace_set_mpi ignores if inited and active
* nsync for transpose example
* Fix to thread_deleter<void> functor invoke
* Fix thread state and HIP stream enums
- Got rid of `source/lib/omnitrace/include` and `source/lib/omnitrace/src` and merged into `source/lib/omnitrace`
- Updated perfetto submodule to v25.0
- Updated papi submodule
Jonathan R. Madsen