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rocm-systems/.github/workflows/ubuntu-jammy.yml
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Jonathan R. Madsen 9618ddefba Causal profiling (#229) 
* Addition of basic structure

* Reworked categories

* More causal integration additions

* Causal implementation

* Update examples

* delete virtual_speedup files

* Update perfetto submodule to v31.0

* Update dyninst submodule

* Update timemory submodule

* ElfUtils build for libdw

* OMNITRACE_LIKELY and OMNITRACE_UNLIKELY

* Update common lib join

* Examples updates for causal profiling

* config updates with causal options

- OMNITRACE_CAUSAL_FIXED_LINE
- OMNITRACE_CAUSAL_FIXED_SPEEDUP
- OMNITRACE_CAUSAL_FILE
- OMNITRACE_CAUSAL_BINARY_SCOPE
- OMNITRACE_CAUSAL_SOURCE_SCOPE
- version info in banner
- support increments in parse_numeric_range
- fix occasional deadlock in first call to get_config

* PTL general task group

* Always include PID in debug/verbose messages

* Add blocking/unblocking gotchas to runtime init bundle

* CausalState

* thread_data updates

- generic component_bundle_cache

* Improve handling of causal in category_region

* components updates

- backtrace_causal component
- backtrace::get_data member func
- decrease ignore_depth in backtrace::sample(int)
- handle "omnitrace_main" in backtrace::filter_and_patch(...)
- tweak internal thread state scope for pthread_mutex_gotcha wrappers

* simplify tracing get_instrumentation_bundles usage

* sampling updates

- include backtrace_causal component
- disable backtrace_metrics if using causal and not using perfetto
- disable backtrace and backtrace_timestamp when using causal
- post_process_causal

* causal updates

- more checks in blocking_gotcha and unblocking_gotcha start/stop
- miscellaneous overhaul of data
- experiment update

* Remove virtual speedup

* libomnitrace code_object

* causal-profiling test

* libomnitrace library.cpp updates

- handle causal profiling
- fini_bundle

* Disable causal profiling by default

* Updated causal code and example

- example: three execution variants: cpu + rng, cpu, rng
- example: three instrumentation variants: none, omni, coz
- fix blocking gotcha credit
- rework perform_experiment_impl
- get_eligible_address_ranges
- compute_eligible_lines
- support fixed lines/speedups/functions
- update selected_entry to support function mode
- fix causal::delay
- experiment updates

* omnitrace_progress / omnitrace_user_progress

- with accompanying omnitrace_annotated_progress / omnitrace_user_annotated_progress

* Update timemory submodule

* CausalMode

- mode indicated whether causal predictions source be at line-level or function-level

* code_object, config, runtime, sampling, thread_data

- code_object: address_range
- code_object: basic::line_info serialize(), name(), hash()
- config updates
- two signals for causal sampling
- thread_data init fixes

* pthread updates

- pthread_create_gotcha processes delays
- pthread_mutex_gotcha does not wrap pthread_join in causal mode

* backtrace_causal update

- dynamic delay period stats

* main wrapper uses basename of argv[0]

* update elfio submodule

* perf support (currently unused)

* Fix experiment JSON serialization

- static_vector.hpp (unused)

* causal executable + config options updates

- omnitrace-causal exe simplifies running multiple causal configs
- changed the causal config option names

* Support both throughput and latency points

* process-causal-json.py script

- will be used later for testing

* stable_vector

* Rework thread_data

* Improve omnitrace-causal exe

- better verbosity handling
- correct diagnosis of status for child process
- execvpe when only one iteration (debugging)

* Update timemory submodule

* exe --version

- omnitrace, omnitrace-avail, and omnitrace-sample all support --version on command-line

* OMNITRACE_INTERNAL_API + OMNITRACE_{LIKELY,UNLIKELY}

* omnitrace-causal cmake format

* omnitrace config update

- OMNITRACE_CAUSAL_FILE_CLOBBER

* custom exception

- wraps STL exception and gets stacktrace during construction

* exit_gotcha supports _Exit

* use global construct_on_init + max threads

- add some safety when exceeding max # of threads

* update code_object binary filter

- exclude dyninst and tbbmalloc library

* containers: c_array, static_vector, stable_vector

- moved utility::c_array to container::c_array
- created static_vector: std::vector bound to std::array
- created stable_vector: vector with stable references

* grow thread_data when new thread created

* causal updates

- data: improve compute_eligible_lines to ignore lambdas
- data: use new thread_data
- delay: use new thread_data
- experiment: properly support latency points
- experiment: support file clobber
- experiment: ensure non-zero experiment time
- progress_point: use new thread_data
- backtrace_causal: use new thread_data

* Update causal-profiling tests

* fix omnitrace-causal backslash escaping

* process-causal-json script

* restructure causal implementation

- update verbose messages for omnitrace-causal diagnose_status
- migrated causal implementation in sampling.cpp to causal/sampling.cpp
- OMNITRACE_USE_CAUSAL does not require OMNITRACE_USE_SAMPLING
- added Mode::Causal
- causal sampling uses same signals as regular sampling
- moved tracing::thread_init to implementation file
- combined tracing::thread_init and tracing::thread_init_sampling
- added causal/components folder
- pthread_create_gotcha::wrapper_config
- omnitrace_preload checks OMNITRACE_USE_CAUSAL
  - updates mode accordingly

* update timemory submodule

* update timemory submodule

* causal example updates

- causal for lulesh

* perf code + utility - helpers

- relocated causal perf code
- placement new when generating unique ptr trait for potentially allocating during sampling
- additions to utility header
- removed previously added helpers.hpp

* update timemory submodule

* Default env variables for omnitrace-causal

- activate OMNITRACE_USE_KOKKOSP, etc.

* update stable_vector and static_vector

- static vector can use atomic for size tracking for thread-safe situations

* update causal example header

- CAUSAL_PROGRESS_NAMED
- use CAUSAL_ prefix for some macros

* Tweak lulesh example

- use CAUSAL_PROGRESS instead of CAUSAL_BEGIN and CAUSAL_END

* omnitrace-sample support for causal mode

- set OMNITRACE_USE_SAMPLING to off when OMNITRACE_MODE=causal

* refactor and cleanup code_object

- scope filter
- fixes to address_range

* overhaul causal data + causal config options

- full support for function and line mode
- support static vector of instruction pointers
- improve line info mapping resolution
- remove thread-locality from miscellanous functions where unnecessary
- causal options for {binary,source,function,fileline} exclusion

* causal experiment, sampling, and backtrace updates

- is_selected + unwind address array
- experiment warning about progress points
- increased buffer size for backtrace_casual sampler
- backtrace_causal only stores IP addresses instead of full unwind info

* category_region updates

- minor refactor
- local_category_region::mark

* Update causal tests

* Bump version to 1.8.0

* omnitrace-causal args + CLOBBER -> RESET

- renamed OMNITRACE_CAUSAL_FILE_CLOBBER to OMNITRACE_CAUSAL_FILE_RESET
- updated omnitrace-causal exe to support recently added configuration options
- other miscellaneous tweaks to data.cpp, experiment.cpp, and sampling.cpp

* Refactor causal and code_object

- code_object.hpp and code_object.cpp moved into binary folder
- causal components namespaced into omnitrace::causal::component
- moved sample_data out of backtrace_causal and into own file
- renamed backtrace_causal to causal::component::backtrace

* preload omnitrace_init + OMNITRACE_DEBUG_MARK

- env OMNITRACE_DEBUG_MARK
- fix omnitrace_init call when LD_PRELOAD-ing omnitrace

* Fix fileline support + line-info output names + experiment log

- line-info log files are prefixed with experiment name
- don't print experiment duration when E2E
- account for fileline scope in analysis

* KokkosP: OMNITRACE_KOKKOSP_NAME_LENGTH_MAX

- config option to limit the name of kokkos tool callbacks
- remove [kokkos] from KokkosP names

* Update causal example

- minor tweaks to decrease probability of overlapping regions in binary

* omnitrace-causal update

- prefix N / Ntot in environment printout

* Miscellaneous updates

- causal::finish_experimenting()
- OMNITRACE_CAUSAL_RANDOM_SEED
- KokkosP causal updates
  - exclude some callbacks, make some callbacks unique, etc.
- address_range::operator+=(address_range)
- combine contiguous ranges in binary/analysis.cpp when file, func, line is same and address range is contiguous
- bfd_line_info reads inline info
- wait for perform_experiment_impl to complete
- causal::delay updates
  - delay::process checks if experiment is active
  - uses threading::get_id()
- experiment scales duration up for larger speedup experiments
- line info samples includes excluded lines
- sampler uses CLOCK_REALTIME
- blocking_gotcha updates
  - is no longer fully static
  - adds audit routine which sets the postblock value to zero if try/timed routine fails
- category::host was added to causal_throughput_categories_t
- pthread_create_gotcha sets new threads local parent delay
  - was using internal value, now uses sequent value

* Causal improvements to KokkosP

* Updates to experiment time scaling

- use stats instead of just max

* binary/link_map.{hpp,cpp}

* update process-causal-json.py

* Folded fileline scope into source scope

* Update documentation

- Add documentation for causal profiling
- Replace 'Omnitrace' with 'OmniTrace' everywhere

* Update causal-helpers.cmake + omnitrace-testing.cmake

- split tests/CMakeLists.txt partially into omnitrace-testing.cmake

* omnitrace/causal.h

- OMNITRACE_CAUSAL_PROGRESS
- OMNITRACE_CAUSAL_PROGRESS_NAMED
- OMNITRACE_CAUSAL_BEGIN
- OMNITRACE_CAUSAL_END

* selected_entry + remove default filters for lambdas and operator()

- selected entry stores range and binary load address

* update process-causal-json.py

* format examples/lulesh/CMakeLists.txt

* causal-helpers find_package(Threads)

* OMNITRACE_KOKKOSP_KERNEL_LOGGER

- was OMNITRACE_KOKKOS_KERNEL_LOGGER

* quiet find of coz-profiler

* Fix rocm_smi exception handling

* Update timemory submodule (binutils)

- fix binutls compile error on some systems
- bump binutils to v2.40

* Fix miscellaneous tests

* OMNITRACE_KOKKOSP_PREFIX

* revert rocm_smi handling

* ElfUtils updates

- default to download version 0.188
- add -Wno-error=null-dereference due to GCC 12 compiler error

* Update causal example

* Remove OMNITRACE_VERBOSE from global workflow envs

* Reliable causal test

* disable compilation of causal perf files

* Remove set_current_selection with unwind stack

* update timemory submodule

* fix for segfault on bionic

- locking in TLS dtor was causing segfault

* remove experiment::is_selected(unwind_stack_t)

* update default init of selected_entry

* Fix for when IP is not offset by load address

* Update CMakeLists.txt

* Miscellaneous updates

- OMNITRACE_WARNING_OR_CI_THROW
- OMNITRACE_REQUIRE
- OMNITRACE_PREFER
- fixed issues with no ASLR
-  added load address variable and ipaddr() func to basic/bfd line info
- removed get_basic() from dwarf_line_info
- TIMEMORY_PREFER -> OMNITRACE_PREFER
- removed previously added binary_address and range variables from selected_entry

* Removed superfluous CausalState

* Additional causal tests (lulesh + kokkos)

* filter, prefer, analysis ASLR handling

- removed default filter on cold functions
- fixed OMNITRACE_PREFER
- fixed analysis ASLR handling

* Tweak line-info output

* Removed some superfluous code

- causal/delay
- causal/selected_entry

* Exclude main.cold in function mode

* Update validate-perfetto-proto.py

- account for occasional http errors

* Add sampling test disabling tmp files

* argparser for process-causal-json

- support validation
- support filtering

* Avoid pthread_{lock,unlock} in sampling offload

- use homemade atomic_mutex/atomic_lock since contention will be low and using pthread tools might trigger our wrappers

* Rename process-causal-json.py

- validate-causal-json.py

* rework omnitrace_add_causal_test

- capable of performing validation
- added validation tests

* Fix kokkosp_begin_deep_copy + causal

* Tweak address range in bfd_line_info::read_pc

* Tweak analysis and data IP handling

- look for gaps

* Disable scaling experiment time by speedup

* Revert change in max threads during CI

* binary updates

- significant overhaul of binary analysis implementation
- removed "basic_line_info" and "bfd_line_info" in lieu of "symbol" class
  - symbol class has basic BFD info + vector of inlines + vector of dwarf info

* Updated causal to use new binary analysis

- Fix symbol.cpp includes

* Updated formatting target

- include *.cmake files

* Updated causal tests

- causal tests should be stable now

* Update timemory and dyninst submodules

- TPLs are stripped + built w/o debug info

* Increase tolerance for causal validation speedups

- higher speedups have more variance (increased to +/- 5 from 3)

* Support causal output for MPI

- i.e. tag with MPI rank

* omnitrace-causal launcher argument

* improve experiment sampling output

* causal data updates

- call compute lines once
- fixed filtered cached binary info
- debugging info when experiment fails to start

* Tweaked causal validation tests

* dwarf_entry ranges

* CI updates

- increase max threads to 64

* Tweak causal E2E validation tests

- more threads
- shorter thread runtime
- more iterations

* Fix shadowed variable

* fix symbol read_bfd last PC calculation

* fix maybe-uninitialized warning

* omnitrace-causal launcher update

- only inject "omnitrace-causal --" once
- throw error if no matches found

* Update causal profiling docs for launcher

* fix address range boundaries
2023-01-24 18:53:23 -06:00

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name: Ubuntu 22.04 (GCC, Python, ROCm)
run-name: ubuntu-jammy
on:
push:
branches: [ main, develop ]
paths-ignore:
- '*.md'
- 'source/docs/**'
pull_request:
branches: [ main, develop ]
paths-ignore:
- '*.md'
- 'source/docs/**'
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
env:
OMNITRACE_CI: ON
OMNITRACE_TMPDIR: "%env{PWD}%/testing-tmp"
jobs:
ubuntu-jammy-external:
runs-on: ubuntu-20.04
container:
image: jrmadsen/omnitrace:ci-base-ubuntu-22.04
strategy:
fail-fast: false
matrix:
compiler: ['g++-11', 'g++-12']
hip: ['OFF']
mpi: ['OFF']
ompt: ['OFF']
papi: ['OFF']
python: ['ON']
lto: ['OFF']
strip: ['OFF']
hidden: ['ON', 'OFF']
build-type: ['Release']
mpi-headers: ['ON', 'OFF']
static-libgcc: ['OFF']
static-libstdcxx: ['OFF']
build-dyninst: ['OFF']
rocm-version: ['0.0']
include:
- compiler: 'g++'
hip: 'ON'
mpi: 'OFF'
ompt: 'OFF'
papi: 'OFF'
python: 'ON'
lto: 'OFF'
strip: 'OFF'
hidden: 'ON'
build-type: 'Release'
mpi-headers: 'OFF'
static-libgcc: 'OFF'
static-libstdcxx: 'OFF'
build-dyninst: 'OFF'
rocm-version: '5.3'
env:
OMPI_ALLOW_RUN_AS_ROOT: 1
OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1
OMNITRACE_CI: 'ON'
steps:
- uses: actions/checkout@v3
- name: Install Packages
timeout-minutes: 25
uses: nick-fields/retry@v2
with:
retry_wait_seconds: 30
timeout_minutes: 25
max_attempts: 5
command: |
apt-get update &&
apt-get install -y software-properties-common &&
apt-get upgrade -y &&
apt-get install -y build-essential m4 autoconf libtool python3-pip libiberty-dev clang libomp-dev libopenmpi-dev libfabric-dev openmpi-bin environment-modules ${{ matrix.compiler }} &&
python3 -m pip install --upgrade pip &&
python3 -m pip install numpy &&
python3 -m pip install 'cmake==3.21.4' &&
for i in 6 7 8 9 10; do /opt/conda/envs/py3.${i}/bin/python -m pip install numpy perfetto dataclasses; done
- name: Install ROCm Packages
timeout-minutes: 25
if: ${{ matrix.rocm-version != '0.0' }}
uses: nick-fields/retry@v2
with:
retry_wait_seconds: 30
timeout_minutes: 25
max_attempts: 5
shell: bash
command: |
wget -q -O - https://repo.radeon.com/rocm/rocm.gpg.key | apt-key add -
echo "deb [arch=amd64] https://repo.radeon.com/rocm/apt/${{ matrix.rocm-version }}/ jammy main" | tee /etc/apt/sources.list.d/rocm.list
apt-get update
apt-get install -y {rocm-hip-sdk,roctracer-dev,rocprofiler-dev,rocm-smi-lib,rocminfo}${{ matrix.rocm-version }}.0
echo "/opt/rocm/bin" >> $GITHUB_PATH
echo "ROCM_PATH=/opt/rocm" >> $GITHUB_ENV
echo "LD_LIBRARY_PATH=/opt/rocm/lib:${LD_LIBRARY_PATH}" >> $GITHUB_ENV
/opt/rocm/bin/hipcc -O3 -c ./examples/transpose/transpose.cpp -o /tmp/transpose.o
- name: Test Environment Modules
timeout-minutes: 15
shell: bash
run: |
set -v
source /usr/share/modules/init/$(basename ${SHELL})
module avail
- name: Configure Env
run: |
echo "CC=$(echo '${{ matrix.compiler }}' | sed 's/+/c/g')" >> $GITHUB_ENV
echo "CXX=${{ matrix.compiler }}" >> $GITHUB_ENV
- name: Configure, Build, and Test
timeout-minutes: 115
shell: bash
run:
git config --global --add safe.directory ${PWD} &&
cmake --version &&
TAG="" &&
append-tagname() { if [ "${1}" == "ON" ]; then TAG="${TAG}-${2}"; fi; } &&
append-tagname ${{ matrix.hip }} rocm-${{ matrix.rocm-version }} &&
append-tagname ${{ matrix.mpi }} mpi &&
append-tagname ${{ matrix.ompt }} ompt &&
append-tagname ${{ matrix.papi }} papi &&
append-tagname ${{ matrix.python }} python &&
append-tagname ${{ matrix.mpi-headers }} mpip &&
append-tagname ${{ matrix.build-dyninst }} internal-dyninst &&
append-tagname ${{ matrix.lto }} lto &&
append-tagname ${{ matrix.strip }} strip &&
append-tagname ${{ matrix.hidden }} hidden-viz &&
append-tagname ${{ matrix.static-libgcc }} libgcc &&
append-tagname ${{ matrix.static-libstdcxx }} libstdcxx &&
python3 ./scripts/run-ci.py -B build
--name ${{ github.repository_owner }}-${{ github.ref_name }}-ubuntu-jammy-${{ matrix.compiler }}${TAG}
--build-jobs 2
--site GitHub
--
-DCMAKE_C_COMPILER=$(echo '${{ matrix.compiler }}' | sed 's/+/c/g')
-DCMAKE_CXX_COMPILER=${{ matrix.compiler }}
-DCMAKE_BUILD_TYPE=${{ matrix.build-type }}
-DCMAKE_INSTALL_PREFIX=/opt/omnitrace-dev
-DOMNITRACE_BUILD_TESTING=ON
-DOMNITRACE_USE_MPI=${{ matrix.mpi }}
-DOMNITRACE_USE_HIP=${{ matrix.hip }}
-DOMNITRACE_USE_OMPT=${{ matrix.ompt }}
-DOMNITRACE_USE_PAPI=${{ matrix.papi }}
-DOMNITRACE_USE_PYTHON=${{ matrix.python }}
-DOMNITRACE_USE_MPI_HEADERS=${{ matrix.mpi-headers }}
-DOMNITRACE_BUILD_LTO=${{ matrix.lto }}
-DOMNITRACE_BUILD_DYNINST=${{ matrix.build-dyninst }}
-DOMNITRACE_BUILD_HIDDEN_VISIBILITY=${{ matrix.hidden }}
-DOMNITRACE_BUILD_STATIC_LIBGCC=${{ matrix.static-libgcc }}
-DOMNITRACE_BUILD_STATIC_LIBSTDCXX=${{ matrix.static-libstdcxx }}
-DOMNITRACE_PYTHON_PREFIX=/opt/conda/envs
-DOMNITRACE_PYTHON_ENVS="py3.7;py3.8;py3.9;py3.10"
-DOMNITRACE_STRIP_LIBRARIES=${{ matrix.strip }}
-DOMNITRACE_MAX_THREADS=64
-DOMNITRACE_DISABLE_EXAMPLES="transpose;rccl"
-DOMNITRACE_BUILD_NUMBER=${{ github.run_attempt }}
-DUSE_CLANG_OMP=OFF
- name: Install
timeout-minutes: 10
run:
cmake --build build --target install --parallel 2
- name: CPack and Install
run: |
cd build
cpack -G STGZ
mkdir -p /opt/omnitrace
./omnitrace-*.sh --prefix=/opt/omnitrace --exclude-subdir --skip-license
- name: Test Install with Modulefile
timeout-minutes: 15
shell: bash
run: |
set -v
source /usr/share/modules/init/$(basename ${SHELL})
module use /opt/omnitrace/share/modulefiles
module avail
module load omnitrace
./scripts/test-install.sh --test-omnitrace=1 --test-omnitrace-avail=1 --test-omnitrace-sample=1 --test-omnitrace-python=1 --test-omnitrace-rewrite=1 --test-omnitrace-runtime=1 --test-omnitrace-critical-trace=1
- name: Test User API
timeout-minutes: 10
run: |
set -v
./scripts/test-find-package.sh --install-dir /opt/omnitrace
- name: CTest Artifacts
if: success() || failure()
uses: actions/upload-artifact@v3
with:
name: ctest-${{ github.job }}-log
path: |
build/*.log
- name: Data Artifacts
if: success() || failure()
uses: actions/upload-artifact@v3
with:
name: data-${{ github.job }}-files
path: |
build/omnitrace-tests-config/*.cfg
build/omnitrace-tests-output/**/*.txt
build/omnitrace-tests-output/**/*-instr*.json
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