v0.0.3: MPI wrappers w/o full MPI support + setup-env.sh (#15)
* v0.0.3: MPI wrappers w/o full MPI support + setup-env.sh
- bumped to v0.0.3
- enabled gotcha wrapping of MPI functions w/o enabling MPI
- added setup-env.sh script
- minor updates to testing
- Update timemory submodule
- fixes tim::component::configure_mpip undefined symbol
- Script updates
[ROCm/rocprofiler-systems commit: c56b49a0bd]
Этот коммит содержится в:
Jonathan R. Madsen
коммит произвёл
GitHub
GitHub
родитель
2cc8005680
Коммит
cdd2707058
@@ -9,16 +9,23 @@ if(CMAKE_SOURCE_DIR STREQUAL CMAKE_BINARY_DIR AND CMAKE_CURRENT_SOURCE_DIR STREQ
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message(AUTHOR_WARNING "In-source build")
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endif()
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if(NOT UNIX OR APPLE)
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message(
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AUTHOR_WARNING
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"hosttrace only supports Linux. Configure and/or build is likely to fail")
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endif()
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project(
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hosttrace
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LANGUAGES C CXX
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VERSION 0.0.2)
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VERSION 0.0.3)
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message(
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STATUS
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"[${PROJECT_NAME}] version ${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}.${PROJECT_VERSION_PATCH}"
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)
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set(CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/cmake ${CMAKE_MODULE_PATH})
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set(CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/cmake ${PROJECT_SOURCE_DIR}/cmake/Modules
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${CMAKE_MODULE_PATH})
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set(BUILD_SHARED_LIBS
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ON
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CACHE BOOL "Build shared libraries")
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@@ -51,14 +58,13 @@ add_option(HOSTTRACE_USE_MPI "Enable MPI support" OFF)
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add_option(HOSTTRACE_CUSTOM_DATA_SOURCE "Enable custom data source" OFF)
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add_option(HOSTTRACE_USE_ROCTRACER "Enable roctracer support" ON)
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add_option(HOSTTRACE_BUILD_DYNINST "Build dyninst from submodule" OFF)
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add_option(HOSTTRACE_USE_MPI_HEADERS
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"Enable wrapping MPI functions w/o enabling MPI dependency" OFF)
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# ensure synced
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set(TIMEMORY_USE_MPI
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${HOSTTRACE_USE_MPI}
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CACHE BOOL "Enable MPI support" FORCE)
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set(TRANSPOSE_USE_MPI
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${HOSTTRACE_USE_MPI}
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CACHE BOOL "Enable MPI support" FORCE)
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include(Packages) # finds third-party libraries
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@@ -98,19 +104,20 @@ target_link_libraries(
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PRIVATE hosttrace::hosttrace-threading
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hosttrace::hosttrace-compile-options
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hosttrace::hosttrace-roctracer
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hosttrace::hosttrace-mpi
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$<BUILD_INTERFACE:timemory::timemory-headers>
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$<BUILD_INTERFACE:timemory::timemory-gotcha>
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$<BUILD_INTERFACE:timemory::timemory-cxx-shared>
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$<IF:$<BOOL:${HOSTTRACE_USE_SANITIZER}>,hosttrace::hosttrace-sanitizer,>)
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if(DYNINST_API_RT)
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get_filename_component(DYNINST_API_RT_DIR "${DYNINST_API_RT}" DIRECTORY)
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if(HOSTTRACE_DYNINST_API_RT)
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get_filename_component(HOSTTRACE_DYNINST_API_RT_DIR "${HOSTTRACE_DYNINST_API_RT}"
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DIRECTORY)
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endif()
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set_target_properties(
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hosttrace-library
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PROPERTIES OUTPUT_NAME hosttrace
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INSTALL_RPATH "\$ORIGIN:\$ORIGIN/dyninst-tpls/libs:${DYNINST_API_RT_DIR}")
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hosttrace-library PROPERTIES OUTPUT_NAME hosttrace
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INSTALL_RPATH "\$ORIGIN:\$ORIGIN/dyninst-tpls/libs")
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install(
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TARGETS hosttrace-library
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@@ -143,7 +150,7 @@ set_target_properties(
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OUTPUT_NAME hosttrace
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INSTALL_RPATH_USE_LINK_PATH ON
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INSTALL_RPATH
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"\$ORIGIN/../${CMAKE_INSTALL_LIBDIR}:\$ORIGIN/../${CMAKE_INSTALL_LIBDIR}/dyninst-tpls/lib:${DYNINST_API_RT_DIR}"
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"\$ORIGIN/../${CMAKE_INSTALL_LIBDIR}:\$ORIGIN/../${CMAKE_INSTALL_LIBDIR}/dyninst-tpls/lib"
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)
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install(
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@@ -160,6 +167,9 @@ add_dependencies(hosttrace-exe timemory-avail)
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#
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# ------------------------------------------------------------------------------#
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configure_file(${PROJECT_SOURCE_DIR}/scripts/setup-env.sh.in
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${PROJECT_BINARY_DIR}/scripts/setup-env.sh @ONLY)
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install(
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PROGRAMS ${PROJECT_SOURCE_DIR}/scripts/hosttrace-merge.jl
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DESTINATION ${CMAKE_INSTALL_BINDIR}
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@@ -167,7 +177,12 @@ install(
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install(
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FILES ${PROJECT_SOURCE_DIR}/roctrace.cfg
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DESTINATION ${CMAKE_INSTALL_DATAROOTDIR}
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DESTINATION ${CMAKE_INSTALL_DATAROOTDIR}/${PROJECT_NAME}
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OPTIONAL)
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install(
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FILES ${PROJECT_BINARY_DIR}/scripts/setup-env.sh
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DESTINATION ${CMAKE_INSTALL_DATAROOTDIR}/${PROJECT_NAME}
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OPTIONAL)
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# ------------------------------------------------------------------------------#
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@@ -0,0 +1,41 @@
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# ------------------------------------------------------------------------------#
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#
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# Finds headers for MPI
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#
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# ------------------------------------------------------------------------------#
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include(FindPackageHandleStandardArgs)
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find_path(
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MPI_HEADERS_INCLUDE_DIR
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NAMES mpi.h
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PATH_SUFFIXES include include/mpich include/openmpi mpich openmpi
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HINTS ${MPI_ROOT_DIR}
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PATHS ${MPI_ROOT_DIR})
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if(NOT MPI_HEADERS_INCLUDE_DIR)
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find_package(MPI QUIET)
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if(MPI_C_INCLUDE_DIRS)
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set(MPI_HEADERS_INCLUDE_DIR
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${MPI_C_INCLUDE_DIRS}
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CACHE PATH "Include directory for MPI" FORCE)
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elseif(MPI_CXX_INCLUDE_DIRS)
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set(MPI_HEADERS_INCLUDE_DIR
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${MPI_CXX_INCLUDE_DIRS}
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CACHE PATH "Include directory for MPI" FORCE)
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endif()
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endif()
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if(MPI_HEADERS_INCLUDE_DIR)
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set(MPI_HEADERS_INCLUDE_DIRS ${MPI_HEADERS_INCLUDE_DIR})
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endif()
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mark_as_advanced(MPI_HEADERS_INCLUDE_DIR)
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find_package_handle_standard_args(MPI-Headers REQUIRED_VARS MPI_HEADERS_INCLUDE_DIR)
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if(MPI-Headers_FOUND)
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add_library(MPI::MPI_HEADERS IMPORTED INTERFACE)
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target_include_directories(
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MPI::MPI_HEADERS INTERFACE $<$<COMPILE_LANGUAGE:C>:${MPI_HEADERS_INCLUDE_DIR}>
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$<$<COMPILE_LANGUAGE:CXX>:${MPI_HEADERS_INCLUDE_DIR}>)
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endif()
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@@ -14,6 +14,7 @@ add_interface_library(
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hosttrace-dyninst
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"Provides flags and libraries for Dyninst (dynamic instrumentation)")
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add_interface_library(hosttrace-roctracer "Provides flags and libraries for roctracer")
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add_interface_library(hosttrace-mpi "Provides MPI or MPI headers")
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# include threading because of rooflines
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target_link_libraries(hosttrace-headers INTERFACE hosttrace-threading)
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@@ -56,6 +57,22 @@ if(HOSTTRACE_USE_ROCTRACER)
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set(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_RPATH}:${roctracer_LIBRARY_DIRS}")
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endif()
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# ----------------------------------------------------------------------------------------#
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#
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# MPI
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#
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# ----------------------------------------------------------------------------------------#
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if(HOSTTRACE_USE_MPI)
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find_package(MPI ${hosttrace_FIND_QUIETLY} REQUIRED)
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target_link_libraries(hosttrace-mpi INTERFACE MPI::MPI_C MPI::MPI_CXX)
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elseif(HOSTTRACE_USE_MPI_HEADERS)
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find_package(MPI-Headers ${hosttrace_FIND_QUIETLY} REQUIRED)
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target_compile_definitions(hosttrace-mpi INTERFACE TIMEMORY_USE_MPI_HEADERS
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HOSTTRACE_USE_MPI_HEADERS)
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target_link_libraries(hosttrace-mpi INTERFACE MPI::MPI_HEADERS)
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endif()
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# ----------------------------------------------------------------------------------------#
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#
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# Dyninst
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@@ -153,7 +170,7 @@ else()
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# useful for defining the location of the runtime API
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find_library(
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DYNINST_API_RT dyninstAPI_RT
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HOSTTRACE_DYNINST_API_RT dyninstAPI_RT
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HINTS ${Dyninst_ROOT_DIR} ${Dyninst_DIR}
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PATHS ${Dyninst_ROOT_DIR} ${Dyninst_DIR}
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PATH_SUFFIXES lib)
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@@ -174,9 +191,9 @@ else()
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PATH_SUFFIXES include)
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endif()
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if(DYNINST_API_RT)
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target_compile_definitions(hosttrace-dyninst
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INTERFACE DYNINST_API_RT="${DYNINST_API_RT}")
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if(HOSTTRACE_DYNINST_API_RT)
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target_compile_definitions(
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hosttrace-dyninst INTERFACE DYNINST_API_RT="${HOSTTRACE_DYNINST_API_RT}")
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endif()
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if(Boost_DIR)
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@@ -12,14 +12,16 @@ ENV DEBIAN_FRONTEND noninteractive
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WORKDIR /tmp
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SHELL [ "/bin/bash", "-c" ]
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ARG EXTRA_PACKAGES=""
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RUN apt-get update && \
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apt-get dist-upgrade -y && \
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apt-get install -y build-essential cmake libnuma-dev wget gnupg2 m4 && \
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apt-get install -y build-essential cmake libnuma-dev wget gnupg2 m4 bash-completion git-core && \
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wget -q -O - https://repo.radeon.com/rocm/rocm.gpg.key | apt-key add - && \
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echo 'deb [arch=amd64] https://repo.radeon.com/rocm/apt/debian/ ubuntu main' | tee /etc/apt/sources.list.d/rocm.list && \
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apt-get update && \
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apt-get dist-upgrade -y && \
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apt-get install -y rocm-dev rocm-utils roctracer-dev rocprofiler-dev hip-base hsa-amd-aqlprofile hsa-rocr-dev hsakmt-roct-dev
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apt-get install -y rocm-dev rocm-utils roctracer-dev rocprofiler-dev hip-base hsa-amd-aqlprofile hsa-rocr-dev hsakmt-roct-dev ${EXTRA_PACKAGES}
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ENV LC_ALL C.UTF-8
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WORKDIR /home
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@@ -84,14 +84,14 @@ transpose_a(int* in, int* out, int M, int N)
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}
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void
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run(int argc, char** argv)
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run(int rank, int argc, char** argv)
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{
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(void) argc;
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(void) argv;
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unsigned int M = 4960;
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unsigned int N = 4960;
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std::cout << "M: " << M << " N: " << N << std::endl;
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std::cout << "[" << rank << "] M: " << M << " N: " << N << std::endl;
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size_t size = sizeof(int) * M * N;
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int* matrix = (int*) malloc(size);
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for(size_t i = 0; i < M * N; i++)
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@@ -130,7 +130,7 @@ run(int argc, char** argv)
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double time =
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std::chrono::duration_cast<std::chrono::duration<double>>(t2 - t1).count();
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float GB = (float) size * times * 2 / (1 << 30);
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std::cout << "Runtime of transpose is " << time << " sec\n"
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std::cout << "[" << rank << "] Runtime of transpose is " << time << " sec\n"
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<< "The average performance of transpose is " << GB / time << " GBytes/sec"
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<< std::endl;
|
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|
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@@ -151,6 +151,21 @@ run(int argc, char** argv)
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|
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#if defined(USE_MPI)
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# include <mpi.h>
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|
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void
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do_a2a(int rank)
|
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{
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// Define my value
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int values[3];
|
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for(int i = 0; i < 3; ++i)
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values[i] = rank * 300 + i * 100;
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printf("Process %d, values = %d, %d, %d.\n", rank, values[0], values[1], values[2]);
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|
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int buffer_recv[3];
|
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MPI_Alltoall(&values, 1, MPI_INT, buffer_recv, 1, MPI_INT, MPI_COMM_WORLD);
|
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printf("Values collected on process %d: %d, %d, %d.\n", rank, buffer_recv[0],
|
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buffer_recv[1], buffer_recv[2]);
|
||||
}
|
||||
#endif
|
||||
|
||||
int
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@@ -161,9 +176,10 @@ main(int argc, char** argv)
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||||
MPI_Init(&argc, &argv);
|
||||
MPI_Comm_rank(MPI_COMM_WORLD, &rank);
|
||||
#endif
|
||||
if(rank == 0) run(argc, argv);
|
||||
if(rank == 0) run(rank, argc, argv);
|
||||
#if defined(USE_MPI)
|
||||
MPI_Barrier(MPI_COMM_WORLD);
|
||||
do_a2a(rank);
|
||||
MPI_Finalize();
|
||||
#endif
|
||||
return 0;
|
||||
|
||||
поставляемый
+1
-1
Submodule projects/rocprofiler-systems/external/timemory updated: 9f27fafd2e...11183bbdd7
@@ -395,7 +395,13 @@ struct module_function
|
||||
module = modname;
|
||||
function = fname;
|
||||
signature = get_func_file_line_info(mod, proc);
|
||||
assert(proc->isInstrumentable() == true);
|
||||
if(!proc->isInstrumentable())
|
||||
{
|
||||
verbprintf(0,
|
||||
"Warning! module function generated for un-instrumentable "
|
||||
"function: %s [%s]\n",
|
||||
function.c_str(), module.c_str());
|
||||
}
|
||||
std::pair<address_t, address_t> _range{};
|
||||
if(proc->getAddressRange(_range.first, _range.second))
|
||||
address_range = _range.second - _range.first;
|
||||
|
||||
@@ -115,6 +115,9 @@ struct mpi_gotcha : comp::base<mpi_gotcha, void>
|
||||
|
||||
// this will get called right after MPI_Init and MPI_Init_thread with the return value
|
||||
void audit(const gotcha_data_t& _data, audit::outgoing, int _retval);
|
||||
|
||||
// this will get called right before MPI_Finalize
|
||||
void audit(const gotcha_data_t& _data, audit::incoming);
|
||||
};
|
||||
|
||||
// timemory api struct
|
||||
|
||||
Исполняемый файл
+14
@@ -0,0 +1,14 @@
|
||||
#!/bin/bash
|
||||
|
||||
VERSION=0.0.3
|
||||
ROCM_VERSION=4.3.0
|
||||
|
||||
STANDARD_ARGS="-DCPACK_GENERATOR=STGZ -DCMAKE_BUILD_TYPE=Release -DHOSTTRACE_BUILD_DYNINST=ON -DTIMEMORY_BUILD_PORTABLE=ON"
|
||||
|
||||
cmake -B build-release/core ${STANDARD_ARGS} -DDYNINST_BUILD_{TBB,BOOST,ELFUTILS,LIBIBERTY}=ON -DDYNINST_USE_OpenMP=OFF -DHOSTTRACE_USE_MPI_HEADERS=ON -DHOSTTRACE_USE_ROCTRACER=OFF .
|
||||
cmake --build build-release/core --target package --parallel 8
|
||||
cp build-release/core/hosttrace-${VERSION}-Linux.sh build-release/hosttrace-${VERSION}-Linux.sh
|
||||
|
||||
cmake -B build-release/rocm-mpi ${STANDARD_ARGS} -DDYNINST_BUILD_{TBB,BOOST,ELFUTILS,LIBIBERTY}=ON -DDYNINST_USE_OpenMP=ON -DHOSTTRACE_USE_MPI_HEADERS=ON -DHOSTTRACE_USE_ROCTRACER=ON .
|
||||
cmake --build build-release/rocm-mpi --target package --parallel 8
|
||||
cp build-release/rocm-mpi/hosttrace-${VERSION}-Linux.sh build-release/hosttrace-${VERSION}-Linux-ROCm-${ROCM_VERSION}.sh
|
||||
@@ -0,0 +1,14 @@
|
||||
#!/usr/bin/env bash
|
||||
|
||||
BASEDIR=$(dirname ${BASH_SOURCE[0]})
|
||||
BASEDIR=$(cd ${BASEDIR}/../.. && pwd)
|
||||
|
||||
if [ ! -d "${BASEDIR}" ]; then
|
||||
echo "${BASEDIR} does not exist"
|
||||
return 1
|
||||
fi
|
||||
|
||||
export PATH=${BASEDIR}/bin:${PATH}
|
||||
export LD_LIBRARY_PATH=${BASEDIR}/@CMAKE_INSTALL_LIBDIR@:${LD_LIBRARY_PATH}
|
||||
|
||||
return 0
|
||||
@@ -730,12 +730,14 @@ main(int argc, char** argv)
|
||||
std::set<std::string> module_names;
|
||||
|
||||
auto _add_overlapping = [](module_t* mitr, procedure_t* pitr) {
|
||||
if(!pitr->isInstrumentable()) return;
|
||||
std::vector<procedure_t*> _overlapping{};
|
||||
if(pitr->findOverlapping(_overlapping))
|
||||
{
|
||||
overlapping_module_functions.insert(module_function{ mitr, pitr });
|
||||
for(auto oitr : _overlapping)
|
||||
{
|
||||
if(!oitr->isInstrumentable()) continue;
|
||||
overlapping_module_functions.insert(
|
||||
module_function{ oitr->getModule(), oitr });
|
||||
}
|
||||
@@ -752,7 +754,8 @@ main(int argc, char** argv)
|
||||
{
|
||||
for(auto* pitr : *procedures)
|
||||
{
|
||||
auto _modfn = module_function(itr, pitr);
|
||||
if(!pitr->isInstrumentable()) continue;
|
||||
auto _modfn = module_function{ itr, pitr };
|
||||
module_names.insert(_modfn.module);
|
||||
available_module_functions.insert(std::move(_modfn));
|
||||
_add_overlapping(itr, pitr);
|
||||
@@ -771,9 +774,9 @@ main(int argc, char** argv)
|
||||
for(auto* itr : *app_functions)
|
||||
{
|
||||
module_t* mod = itr->getModule();
|
||||
if(mod)
|
||||
if(mod && itr->isInstrumentable())
|
||||
{
|
||||
auto _modfn = module_function(mod, itr);
|
||||
auto _modfn = module_function{ mod, itr };
|
||||
module_names.insert(_modfn.module);
|
||||
available_module_functions.insert(std::move(_modfn));
|
||||
_add_overlapping(mod, itr);
|
||||
@@ -1332,11 +1335,11 @@ main(int argc, char** argv)
|
||||
else
|
||||
itr->getModuleName(modname, FUNCNAMELEN);
|
||||
|
||||
if(itr == main_func)
|
||||
if(itr == main_func && main_func->isInstrumentable())
|
||||
{
|
||||
hash_ids.emplace_back(std::hash<string_t>()(main_sign.get()),
|
||||
main_sign.get());
|
||||
auto main_mf = module_function(modname, fname, main_sign, itr);
|
||||
auto main_mf = module_function{ modname, fname, main_sign, itr };
|
||||
available_module_functions.insert(main_mf);
|
||||
instrumented_module_functions.insert(main_mf);
|
||||
continue;
|
||||
@@ -1460,8 +1463,8 @@ main(int argc, char** argv)
|
||||
}
|
||||
|
||||
hash_ids.emplace_back(std::hash<string_t>()(name.get()), name.get());
|
||||
available_module_functions.insert(module_function(mod, itr));
|
||||
instrumented_module_functions.insert(module_function(mod, itr));
|
||||
available_module_functions.insert(module_function{ mod, itr });
|
||||
instrumented_module_functions.insert(module_function{ mod, itr });
|
||||
|
||||
auto _f = [=]() {
|
||||
verbprintf(1, "Instrumenting |> [ %s ] -> [ %s ]\n", modname,
|
||||
|
||||
@@ -91,6 +91,17 @@ mpi_gotcha::audit(const gotcha_data_t& _data, audit::outgoing, int _retval)
|
||||
}
|
||||
}
|
||||
|
||||
void
|
||||
mpi_gotcha::audit(const gotcha_data_t& _data, audit::incoming)
|
||||
{
|
||||
HOSTTRACE_DEBUG("[%s] %s()\n", __FUNCTION__, _data.tool_id.c_str());
|
||||
if(mpip_index != std::numeric_limits<uint64_t>::max())
|
||||
comp::deactivate_mpip<tim::component_tuple<hosttrace_component>, hosttrace>(
|
||||
mpip_index);
|
||||
hosttrace_pop_trace("MPI_Finalize()");
|
||||
hosttrace_trace_finalize();
|
||||
}
|
||||
|
||||
void
|
||||
hosttrace_component::start()
|
||||
{
|
||||
|
||||
@@ -83,6 +83,9 @@ setup_gotchas()
|
||||
mpi_gotcha_t::template configure<0, int, int*, char***>("MPI_Init");
|
||||
mpi_gotcha_t::template configure<1, int, int*, char***, int, int*>(
|
||||
"MPI_Init_thread");
|
||||
#if defined(HOSTTRACE_USE_MPI_HEADERS)
|
||||
mpi_gotcha_t::template configure<3, int>("MPI_Finalize");
|
||||
#endif
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
@@ -1,18 +1,25 @@
|
||||
if(NOT DYNINST_API_RT_DIR AND DYNINST_API_RT)
|
||||
get_filename_component(DYNINST_API_RT_DIR "${DYNINST_API_RT}" DIRECTORY)
|
||||
if(NOT HOSTTRACE_DYNINST_API_RT_DIR AND HOSTTRACE_DYNINST_API_RT)
|
||||
get_filename_component(HOSTTRACE_DYNINST_API_RT_DIR "${HOSTTRACE_DYNINST_API_RT}"
|
||||
DIRECTORY)
|
||||
endif()
|
||||
|
||||
if(HOSTTRACE_BUILD_DYNINST)
|
||||
set(DYNINST_API_RT_DIR
|
||||
set(HOSTTRACE_DYNINST_API_RT_DIR
|
||||
"${PROJECT_BINARY_DIR}/external/dyninst/dyninstAPI_RT:${PROJECT_BINARY_DIR}/external/dyninst/dyninstAPI"
|
||||
)
|
||||
endif()
|
||||
|
||||
set(_test_environment
|
||||
"HOSTTRACE_USE_PERFETTO=ON"
|
||||
"LD_LIBRARY_PATH=${PROJECT_BINARY_DIR}:${DYNINST_API_RT_DIR}:$ENV{LD_LIBRARY_PATH}")
|
||||
"HOSTTRACE_USE_TIMEMORY=ON"
|
||||
"LD_LIBRARY_PATH=${PROJECT_BINARY_DIR}:${HOSTTRACE_DYNINST_API_RT_DIR}:$ENV{LD_LIBRARY_PATH}"
|
||||
)
|
||||
|
||||
if(TARGET transpose)
|
||||
if(TRANSPOSE_USE_MPI)
|
||||
set(COMMAND_PREFIX ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} 2)
|
||||
endif()
|
||||
|
||||
add_test(
|
||||
NAME transpose-binary-rewrite
|
||||
COMMAND
|
||||
@@ -22,7 +29,7 @@ if(TARGET transpose)
|
||||
|
||||
add_test(
|
||||
NAME transpose-binary-rewrite-run
|
||||
COMMAND $<TARGET_FILE_DIR:transpose>/transpose.inst
|
||||
COMMAND ${COMMAND_PREFIX} $<TARGET_FILE_DIR:transpose>/transpose.inst
|
||||
WORKING_DIRECTORY ${PROJECT_BINARY_DIR})
|
||||
|
||||
add_test(
|
||||
|
||||
Ссылка в новой задаче
Block a user