Reorganization and critical trace support (#17)

* Roctracer wall clock integration (#16)

* Integrates roctracer values into wall-clock

* Fixed scoping + timemory roctracer

* Fixed data race in roctracer

* Synchronized HIP API on main thread

- Cache hip activity callbacks and execute on main thread
- Minor updates to transpose

* Debugging + MPI + transpose updates

* PTL + HSA and timemory + kernel timing

- PTL usage fixed HSA + timemory issues bc we could control the thread destruction
- Fixed laps counting in roctracer callbacks

* Ignore select HIP API types

- The ignored API types are ignored because there appears to be a bug
  which causes the "end" callback to be labeled as begin
- hipDeviceEnablePeerAccess
- hipImportExternalMemory
- hipDestroyExternalMemory

* Tweaks to PTL config

* Timemory update + pid-prefix w/ mpi headers

- %pid%- prefix with mpi headers
- timemory submodule update

* CMake + critical trace + reorganize library source

- clang-tidy tweaks
- cmake function updates to use hosttrace_ prefix
- update gitignore
- cmake HOSTTRACE_MAX_THREADS option
- Formatting.cmake
- cleaned up MacroUtilities.cmake
- PTL submodule + usage
- tweak to Findroctracer.cmake
- MT transpose
- Updated PTL submodule
- Updated timemory submodule
- fix to hosttrace return value type if type not found
- reorganized library source code
- support for critical trace

* Remove bits/stdint-uintn.h headers

* Rename + config + depth + critical path

- rename hosttrace_timemory_data to instrumentation_bundles
- rename hosttrace_bundle_t to main_bundle_t
- rename bundle_t to instrumentation_bundle_t
- rework of configuration setup
- critical_trace write directly to file option
- tweaked depth calculation
- updated timemory submodule
- improved parallel support in roctracer callbacks
- working critical_trace
- perfetto device-critical-trace and host-critical-trace categories
- made transpose example parallel
- made parallel-overhead example a bit uneven
- relocated LTO activation

* Fixed duplicates in perfetto critical-trace

* reworked critical trace support

- substantial perf improvement (30-45 min -> 30 sec)
- changes to configuration (new and removed options)

* Removed "%pid%-" output prefix in mpi_gotcha

* Update timemory submodule

[ROCm/rocprofiler-systems commit: 752424efc2]

projects/rocprofiler-systems/src/hosttrace.cpp

@@ -1,27 +1,30 @@
-// MIT License
-//
-// Copyright (c) 2020, The Regents of the University of California,
-// through Lawrence Berkeley National Laboratory (subject to receipt of any
-// required approvals from the U.S. Dept. of Energy).  All rights reserved.
+// Copyright (c) 2018 Advanced Micro Devices, Inc. All Rights Reserved.
 //
 // Permission is hereby granted, free of charge, to any person obtaining a copy
 // of this software and associated documentation files (the "Software"), to deal
-// in the Software without restriction, including without limitation the rights
-// to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-// copies of the Software, and to permit persons to whom the Software is
+// with the Software without restriction, including without limitation the
+// rights to use, copy, modify, merge, publish, distribute, sublicense, and/or
+// sell copies of the Software, and to permit persons to whom the Software is
 // furnished to do so, subject to the following conditions:
 //
-// The above copyright notice and this permission notice shall be included in all
-// copies or substantial portions of the Software.
+// * Redistributions of source code must retain the above copyright notice,
+// this list of conditions and the following disclaimers.
+//
+// * Redistributions in binary form must reproduce the above copyright
+// notice, this list of conditions and the following disclaimers in the
+// documentation and/or other materials provided with the distribution.
+//
+// * Neither the names of Advanced Micro Devices, Inc. nor the names of its
+// contributors may be used to endorse or promote products derived from
+// this Software without specific prior written permission.
 //
 // THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 // IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 // FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-// AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+// CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 // LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-// OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-// SOFTWARE.
-//
+// OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS WITH
+// THE SOFTWARE.
 
 #include "hosttrace.hpp"
 
@@ -1183,7 +1186,7 @@ main(int argc, char** argv)
     auto mpie_fini_args = hosttrace_call_expr("HOSTTRACE_MPI_FINALIZE", "OFF");
     auto trace_call_args =
         hosttrace_call_expr("HOSTTRACE_COMPONENTS", default_components);
-    auto use_mpi_call_args  = hosttrace_call_expr("HOSTTRACE_USE_MPI", "ON");
+    auto use_mpi_call_args  = hosttrace_call_expr("HOSTTRACE_USE_PID", "ON");
     auto use_mpip_call_args = hosttrace_call_expr(
         "HOSTTRACE_USE_MPIP", (binary_rewrite && use_mpi && use_mpip) ? "ON" : "OFF");
     auto none_call_args = hosttrace_call_expr();
@@ -1777,7 +1780,7 @@ main(int argc, char** argv)
         const auto& outf = outfile;
         if(outf.find('/') != string_t::npos)
         {
-            auto outdir = outf.substr(0, outf.find_last_of('/') - 1);
+            auto outdir = outf.substr(0, outf.find_last_of('/'));
             tim::makedir(outdir);
         }